Package org.biojava.bio.dp

Class XmlMarkovModel

java.lang.Object

org.biojava.bio.dp.XmlMarkovModel

public class XmlMarkovModel
extends Object

Author:

Matthew Pocock, Thomas Down, Samiul Hasan

Constructor Summary

Constructors

Constructor	Description
XmlMarkovModel()

Method Summary

Modifier and Type	Method	Description
static WeightMatrix	readMatrix(Element root)
static MarkovModel	readModel(Element root)
static void	writeMatrix(WeightMatrix matrix, PrintStream out)
static void	writeModel(MarkovModel model, PrintStream out)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlMarkovModel

public XmlMarkovModel()

Method Detail

readMatrix

public static WeightMatrix readMatrix(Element root)
                               throws IllegalSymbolException,
                                      IllegalAlphabetException,
                                      BioException

Throws:

IllegalSymbolException

IllegalAlphabetException

BioException

readModel

public static MarkovModel readModel(Element root)
                             throws BioException,
                                    IllegalSymbolException,
                                    IllegalAlphabetException

Throws:

BioException

IllegalSymbolException

IllegalAlphabetException

writeMatrix

public static void writeMatrix(WeightMatrix matrix,
                               PrintStream out)
                        throws Exception

Throws:

Exception

writeModel

public static void writeModel(MarkovModel model,
                              PrintStream out)
                       throws Exception

Throws:

Exception