Uses of Class
org.biojava.bio.dp.BackPointer

Packages that use BackPointer

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead

Uses of BackPointer in org.biojava.bio.dp

Fields in org.biojava.bio.dp declared as BackPointer

Modifier and Type	Field	Description
BackPointer	BackPointer.back	The previous backpointer (towards origin of DP matrix) in traceback.

Constructors in org.biojava.bio.dp with parameters of type BackPointer

Constructor	Description
BackPointer(State state, BackPointer back, double score)

Uses of BackPointer in org.biojava.bio.dp.twohead

Fields in org.biojava.bio.dp.twohead declared as BackPointer

Modifier and Type	Field	Description
BackPointer[]	Cell.backPointers
protected BackPointer[][][]	AbstractMatrixPairDPCursor.bPointers
protected BackPointer[][][]	LightPairDPCursor.bPointers	Description of the Field
protected BackPointer[]	AbstractMatrixPairDPCursor.emptyBP
protected BackPointer[]	LightPairDPCursor.emptyBP	Description of the Field

Methods in org.biojava.bio.dp.twohead with parameters of type BackPointer

Modifier and Type	Method	Description
CellCalculator	CellCalculatorFactory.viterbi(ScoreType scoreType, BackPointer terminal)
CellCalculator	DPInterpreter.viterbi(ScoreType scoreType, BackPointer terminal)