Uses of Interface
org.biojava.bio.dp.StatePath

Packages that use StatePath

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.onehead
org.biojava.bio.dp.twohead

Uses of StatePath in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement StatePath

Modifier and Type	Class	Description
class	SimpleStatePath	A no-frills implementation of StatePath.

Methods in org.biojava.bio.dp that return StatePath

Modifier and Type	Method	Description
StatePath	DP.generate(int length)	Generates an alignment from a model.
abstract StatePath	DP.viterbi(SymbolList[] symList, ScoreType scoreType)

Uses of StatePath in org.biojava.bio.dp.onehead

Methods in org.biojava.bio.dp.onehead that return StatePath

Modifier and Type	Method	Description
StatePath	SingleDP.viterbi(SymbolList[] symList, ScoreType scoreType)

Uses of StatePath in org.biojava.bio.dp.twohead

Methods in org.biojava.bio.dp.twohead that return StatePath

Modifier and Type	Method	Description
StatePath	PairwiseDP.viterbi(SymbolList[] seqs, ScoreType scoreType)