Package org.biojava.bio.program.gff3

Class GFF3Record.Impl

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.program.gff3.GFF3Record.Impl

All Implemented Interfaces:

Annotatable, GFF3Record, Changeable

Enclosing interface:

GFF3Record

public static final class GFF3Record.Impl
extends AbstractChangeable
implements GFF3Record

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

Annotatable.AnnotationForwarder

Nested classes/interfaces inherited from interface org.biojava.bio.program.gff3.GFF3Record

GFF3Record.Impl

Field Summary

Fields inherited from interface org.biojava.bio.Annotatable

ANNOTATION

Constructor Summary

Constructors

Constructor	Description
Impl()
Impl(GFF3Record rec)

Method Summary

Modifier and Type	Method	Description
Annotation	getAnnotation()	Should return the associated annotation object.
int	getEnd()
int	getPhase()
double	getScore()
String	getSequenceID()
Term	getSource()
int	getStart()
StrandedFeature.Strand	getStrand()
Term	getType()
void	setEnd(int end)
void	setPhase(int phase)
void	setScore(double score)
void	setSequenceID(String sequenceID)
void	setSource(Term source)
void	setStart(int start)
void	setStrand(StrandedFeature.Strand strand)
void	setType(Term type)

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

Impl

public Impl()

Impl

public Impl(GFF3Record rec)

Method Detail

getSequenceID

public String getSequenceID()

Specified by:

getSequenceID in interface GFF3Record

setSequenceID

public void setSequenceID(String sequenceID)

getSource

public Term getSource()

Specified by:

getSource in interface GFF3Record

setSource

public void setSource(Term source)

getType

public Term getType()

Specified by:

getType in interface GFF3Record

setType

public void setType(Term type)

getStart

public int getStart()

Specified by:

getStart in interface GFF3Record

setStart

public void setStart(int start)

getEnd

public int getEnd()

Specified by:

getEnd in interface GFF3Record

setEnd

public void setEnd(int end)

getScore

public double getScore()

Specified by:

getScore in interface GFF3Record

setScore

public void setScore(double score)

getStrand

public StrandedFeature.Strand getStrand()

Specified by:

getStrand in interface GFF3Record

setStrand

public void setStrand(StrandedFeature.Strand strand)

getPhase

public int getPhase()

Specified by:

getPhase in interface GFF3Record

setPhase

public void setPhase(int phase)

getAnnotation

public Annotation getAnnotation()

Description copied from interface: Annotatable

Should return the associated annotation object.

Specified by:

getAnnotation in interface Annotatable

Returns:

an Annotation object, never null