Class HmmerProfileHMM

  • All Implemented Interfaces:
    Serializable, MarkovModel, Changeable

    public class HmmerProfileHMM
    extends ProfileHMM
    This is a class for representing HMMER generated Profile HMM. It differs from the normal ProfileHMM only in the states which are connected: - there are no insert <-> delete transitions allowed - there is no iO initial insert state (between begin and initial match states) - there is not iN final insert state (between final match state and end state)
    Lachlan Coin
    See Also:
    Serialized Form