Package org.biojava.bio.program.hmmer

Tools for working with profile Hidden Markov Models from the HMMer package. See the HMMer website for more information.

Class Summary

Class	Description
FullHmmerProfileHMM	This is a class for representing the full HMMER generated Profile HMM (including loop states N and C terminal looping states).
HmmerProfileHMM	This is a class for representing HMMER generated Profile HMM.
HmmerProfileParser	A class for parsing in Hmmer markov models from HMM_ls files generated by HMMER training note that this class is still currently experimental.
ProfileEmissionState	A state in a HMMer model.