Tools for working with profile Hidden Markov Models from the HMMer package. See the HMMer website for more information.
Class Summary Class Description FullHmmerProfileHMMThis is a class for representing the full HMMER generated Profile HMM (including loop states N and C terminal looping states). HmmerProfileHMMThis is a class for representing HMMER generated Profile HMM. HmmerProfileParserA class for parsing in Hmmer markov models from HMM_ls files generated by HMMER training note that this class is still currently experimental. ProfileEmissionStateA state in a HMMer model.