Package org.biojava.bio.program.homologene

Class AbstractOrthoPairSet

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.program.homologene.AbstractOrthoPairSet

All Implemented Interfaces:

OrthoPairSet, Changeable

Direct Known Subclasses:

SimpleOrthoPairSet

public abstract class AbstractOrthoPairSet
extends AbstractChangeable
implements OrthoPairSet

represents the Homologene Group.

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.homologene.OrthoPairSet

OrthoPairSet.Iterator

Field Summary

Fields inherited from interface org.biojava.bio.program.homologene.OrthoPairSet

MODIFY

Constructor Summary

Constructors

Constructor	Description
AbstractOrthoPairSet()

Method Summary

Modifier and Type	Method	Description
OrthoPairSet	filter(OrthoPairFilter filter)	filter an OrthoPairSet

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.bio.program.homologene.OrthoPairSet

addOrthoPair, getMinIdentity, getName, getTaxa, iterator, removeOrthoPair, setName, size

Constructor Detail

AbstractOrthoPairSet

public AbstractOrthoPairSet()

Method Detail

filter

public OrthoPairSet filter(OrthoPairFilter filter)

Description copied from interface: OrthoPairSet

filter an OrthoPairSet

Specified by:

filter in interface OrthoPairSet