OrthoPairSet (biojava-legacy 1.9.5 API)

All Known Implementing Classes:

AbstractOrthoPairSet, SimpleOrthoPairSet
```
public interface OrthoPairSet
```
represents the Homologene Group.

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static interface OrthoPairSet.Iterator

Field Summary

Fields
Modifier and Type Field Description

static ChangeType MODIFY

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`addOrthoPair(OrthoPair orthology)`	adds a specified OrthoPair relationship to this group.
`OrthoPairSet`	`filter(OrthoPairFilter filter)`	filter an OrthoPairSet
`double`	`getMinIdentity()`	get the lowest level of identity observed in this Group
`String`	`getName()`	retrieves name of this group.
`Set`	`getTaxa()`	get the taxa represented in this group
`OrthoPairSet.Iterator`	`iterator()`	returns an iterator to the members of this set
`void`	`removeOrthoPair(OrthoPair orthology)`	removes a specified OrthoPair relationship from this group.
`void`	`setName(String name)`	set the name of this group.
`int`	`size()`	returns an iterator to the contents of the set. /** no. of entries in this Homologene group

- Field Detail
  - MODIFY
```
static final ChangeType MODIFY
```
- Method Detail
  - getName
```
String getName()
```
    retrieves name of this group. Homologene itself does not assign names or identifiers to groups.
  - setName
```
void setName(String name)
```
    set the name of this group.
  - addOrthoPair
```
void addOrthoPair(OrthoPair orthology)
           throws ChangeVetoException
```
    adds a specified OrthoPair relationship to this group.
    
    Throws:
    
    ChangeVetoException
  - removeOrthoPair
```
void removeOrthoPair(OrthoPair orthology)
              throws ChangeVetoException
```
    removes a specified OrthoPair relationship from this group.
    
    Throws:
    
    ChangeVetoException
  - size
```
int size()
```
    returns an iterator to the contents of the set. /** no. of entries in this Homologene group
  - iterator
```
OrthoPairSet.Iterator iterator()
```
    returns an iterator to the members of this set
  - getTaxa
```
Set getTaxa()
```
    get the taxa represented in this group
  - getMinIdentity
```
double getMinIdentity()
```
    get the lowest level of identity observed in this Group
  - filter
```
OrthoPairSet filter(OrthoPairFilter filter)
```
    filter an OrthoPairSet