Uses of Interface
org.biojava.bio.program.homologene.SimilarityType
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Packages that use SimilarityType Package Description org.biojava.bio.program.homologene Support classes for Homologene data. -
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Uses of SimilarityType in org.biojava.bio.program.homologene
Classes in org.biojava.bio.program.homologene that implement SimilarityType Modifier and Type Class Description static class
SimilarityType.PlaceHolder
Fields in org.biojava.bio.program.homologene declared as SimilarityType Modifier and Type Field Description static SimilarityType
SimilarityType. CURATED
static SimilarityType
SimilarityType. MULTIPLE
static SimilarityType
SimilarityType. TWIN
Methods in org.biojava.bio.program.homologene that return SimilarityType Modifier and Type Method Description SimilarityType
OrthoPair. getSimilarity()
gets the second orthologue in the orthology relationship.SimilarityType
SimpleOrthoPair. getSimilarity()
Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType Modifier and Type Method Description OrthoPair
HomologeneDB. createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
Create a computed orthology entry.OrthoPair
SimpleHomologeneDB. createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType Constructor Description BySimilarityType(SimilarityType type)
SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)
constructor for the computed form of an orthology relationship.
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