Parser for Phred output
Interface Summary Interface Description QualitativeQualitative is an interface for classes wanting to hold quality data in symbolic form such as Phred scores.
Class Summary Class Description PhredFormatFormat object representing Phred Quality files. PhredSequencePhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores. PhredToolsPhredTools contains static methods for working with phred quality data.