Package org.biojava.bio.program.ssaha
Class SearchListener.FilterByLength
- java.lang.Object
-
- org.biojava.bio.program.ssaha.SearchListener.Wrapper
-
- org.biojava.bio.program.ssaha.SearchListener.FilterByLength
-
- All Implemented Interfaces:
SearchListener
- Enclosing interface:
- SearchListener
public static final class SearchListener.FilterByLength extends SearchListener.Wrapper
A simple listener that filters out all hits that are too short.- Since:
- 1.4
- Author:
- Matthew Pocock
-
-
Nested Class Summary
-
Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SearchListener
SearchListener.Echo, SearchListener.FilterByLength, SearchListener.Tee, SearchListener.Wrapper
-
-
Constructor Summary
Constructors Constructor Description FilterByLength(SearchListener delegate, int minLength)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
hit(int hitID, int queryOffset, int hitOffset, int hitLength)
There has been a hit between the query sequence and a database sequence.-
Methods inherited from class org.biojava.bio.program.ssaha.SearchListener.Wrapper
endSearch, startSearch
-
-
-
-
Constructor Detail
-
FilterByLength
public FilterByLength(SearchListener delegate, int minLength)
-
-
Method Detail
-
hit
public void hit(int hitID, int queryOffset, int hitOffset, int hitLength)
Description copied from interface:SearchListener
There has been a hit between the query sequence and a database sequence.- Specified by:
hit
in interfaceSearchListener
- Overrides:
hit
in classSearchListener.Wrapper
- Parameters:
hitID
- the number of the sequence hit; resolvable by String id = DataStore.seqNameForID(hitID)queryOffset
- the offset into the query sequencehitOffset
- the offset into the sequence hit in the databasehitLength
- the number of symbols hit
-
-