Uses of Interface
org.biojava.bio.program.ssaha.SearchListener
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Packages that use SearchListener Package Description org.biojava.bio.program.ssaha SSAHA sequence searching API. -
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Uses of SearchListener in org.biojava.bio.program.ssaha
Classes in org.biojava.bio.program.ssaha that implement SearchListener Modifier and Type Class Description class
HitMerger
A listener that merges overlapping hits and culls all hits under a given length.static class
SearchListener.Echo
A SearchListener that prints events out to a PrintStream.static class
SearchListener.FilterByLength
A simple listener that filters out all hits that are too short.static class
SearchListener.Tee
A SearchListener that passes events on to two delegate listeners.static class
SearchListener.Wrapper
A simple wrapper implementation.Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener Modifier and Type Method Description void
CompactedDataStore. fireHits(int word, int offset, SearchListener listener)
void
CompactedDataStore. search(String seqID, SymbolList symList, SearchListener listener)
void
DataStore. search(String id, SymbolList symList, SearchListener listener)
Search the DataStore with a symbol list.Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener Constructor Description FilterByLength(SearchListener delegate, int minLength)
HitMerger(SearchListener delegate, int minLength)
Build a new HitMerger that will pass events on to a delegate.Tee(SearchListener d1, SearchListener d2)
Wrapper(SearchListener delegate)
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