Interface UnigeneCluster

  • All Superinterfaces:
    Annotatable, Changeable

    public interface UnigeneCluster
    extends Annotatable

    A single unigene cluster.

    This represents all of the information available about a single unigene cluster. This includes the sequences that are in it, the unique sequence that is its representative, the cluster id and all the annotation available via the data file. Much of the annotation may be accessible via the getAnnotation() method.

    There is much more information in the Unigene clusters than just the id, title and sequences. This is all stoored in the annotation associated with the cluster. The annotation bundle conforms to the schema in UnigeneTools.UNIGENE_ANNOTATION.

    Matthew Pocock
    • Method Detail

      • getID

        String getID()
        The public unigene ID.
        get the cluster ID as a String
      • getTitle

        String getTitle()
        The cluster title.
        the cluster title as a String
      • getAll

        SequenceDB getAll()
        All sequences that map to this cluster.
        a SequenceDB of all sequences mapping to this cluster.
      • getUnique

        Sequence getUnique()
        The unique sequence that is used as a representative for this cluster.
        the cluster's unique Sequence