Package org.biojava.bio.program.unigene

Objects for representing Unigene clusters.

Description

Unigene is a database of ESTs from different organisms and the libraries they were extracted from. This package provides an API for working with Unigene, including the ability to develop your own custom parsers, Objects and Interfaces for representing Unigene records and implementations that index the Unigene download flat files, or an SQL schema.

Interface Summary

Interface	Description
UnigeneCluster	A single unigene cluster.
UnigeneDB	A database of Unigene clusters.
UnigeneFactory	Objects that can be used to produce a UnigeneDB instance given a URL.

Class Summary

Class	Description
FlatFileUnigeneFactory	A UnigeneFactory that will use flat-file indexing of the unigene ascii-art files.
SQLUnigeneFactory	An implementatoin of UnigeneFactory that manages it's data in an SQL database.
UnigeneTools	Usefull tools for working with Unigene.