Uses of Class
org.biojava.bio.proteomics.Protease

Packages that use Protease

Package	Description
org.biojava.bio.proteomics	Utilities to aid in performing various physical analysis of proteins.

Uses of Protease in org.biojava.bio.proteomics

Methods in org.biojava.bio.proteomics that return Protease

Modifier and Type	Method	Description
static Protease	ProteaseManager.createProtease(String cleaveRes, boolean endoProtease, String name)
static Protease	ProteaseManager.createProtease(String cleaveRes, boolean endoProtease, String notCleaveRes, String name)
static Protease	ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, String name)
static Protease	ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, SymbolList notCleaveRes, String name)	Creates and registers a new Protease.
static Protease	ProteaseManager.getArg_C()
static Protease	ProteaseManager.getAsp_N()
static Protease	ProteaseManager.getChymotrypsin()
static Protease	ProteaseManager.getCNBr()
static Protease	ProteaseManager.getGlu_C_bicarbonate()
static Protease	ProteaseManager.getGlu_C_phosphate()
static Protease	ProteaseManager.getLys_C()
static Protease	Protease.getProteaseByName(String proteaseName)	Retrieves a reference to the named Protease.
static Protease	ProteaseManager.getProteaseByName(String proteaseName)	Gets a Protease instance by name.
static Protease	ProteaseManager.getTrypsin()

Methods in org.biojava.bio.proteomics with parameters of type Protease

Modifier and Type	Method	Description
static void	ProteaseManager.registerProtease(Protease prot)	Registers a protease and ensures its flyweight status
void	Digest.setProtease(Protease protease)