Package org.biojava.bio.search

Class BlastLikeSearchFilter.BySubHitProperty

java.lang.Object

org.biojava.bio.search.BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

org.biojava.bio.search.BlastLikeSearchFilter.BySubHitProperty

All Implemented Interfaces:

Serializable, BlastLikeSearchFilter

Enclosing interface:

BlastLikeSearchFilter

public static final class BlastLikeSearchFilter.BySubHitProperty
extends BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

Applies test to the value specified by the key in subhit properties.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.search.BlastLikeSearchFilter

BlastLikeSearchFilter.AbstractBlastLikeSearchFilter, BlastLikeSearchFilter.And, BlastLikeSearchFilter.ByHitProperty, BlastLikeSearchFilter.BySearchProperty, BlastLikeSearchFilter.BySubHitProperty, BlastLikeSearchFilter.Node, BlastLikeSearchFilter.Not, BlastLikeSearchFilter.Or

Field Summary

Fields inherited from class org.biojava.bio.search.BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

cachedOutcome

Fields inherited from interface org.biojava.bio.search.BlastLikeSearchFilter

KEY_QUERY_ID

Constructor Summary

Constructors

Constructor	Description
BySubHitProperty(String key, FilterTest test)

Method Summary

Modifier and Type	Method	Description
void	evaluate(BlastLikeSearchFilter.Node fch)	computes the outcome of this filter on the specified node and stores it.

Methods inherited from class org.biojava.bio.search.BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

accept, reset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BySubHitProperty

public BySubHitProperty(String key,
                        FilterTest test)

Method Detail

evaluate

public void evaluate(BlastLikeSearchFilter.Node fch)

Description copied from interface: BlastLikeSearchFilter

computes the outcome of this filter on the specified node and stores it. This method is only exposed to permit it to be included in an interface. Users should not use it.

Specified by:

evaluate in interface BlastLikeSearchFilter

Specified by:

evaluate in class BlastLikeSearchFilter.AbstractBlastLikeSearchFilter