The classes and interfaces for defining sequence similarity and honology.
Interface Summary Interface Description HomologySignifies that two or more features are homologous. HomologyDB HomologyFeature SimilarityPairFeature
SimilarityPairFeaturedescribes a pairwise similarity between two nucleotide sequences (as it extends
Class Summary Class Description HomologyFeature.Template SimilarityPairFeature.EmptyPairwiseAlignment
EmptyPairwiseAlignmentempty pairwise alignment which has labels to empty symbol lists.
Templatefor construction of
SimpleHomologyA no-frills implementation of Homology.