Package org.biojava.bio.seq.homol

The classes and interfaces for defining sequence similarity and honology.

Interface Summary

Interface	Description
Homology	Signifies that two or more features are homologous.
HomologyDB
HomologyFeature
SimilarityPairFeature	SimilarityPairFeature describes a pairwise similarity between two nucleotide sequences (as it extends StrandedFeature).

Class Summary

Class	Description
HomologyFeature.Template
SimilarityPairFeature.EmptyPairwiseAlignment	EmptyPairwiseAlignment empty pairwise alignment which has labels to empty symbol lists.
SimilarityPairFeature.Template	Template for construction of SimilarityPairFeatures.
SimpleHomology	A no-frills implementation of Homology.