Package org.biojava.bio.seq.io

Class ProteinRefSeqProcessor

java.lang.Object

org.biojava.bio.seq.io.SequenceBuilderFilter

org.biojava.bio.seq.io.GenbankProcessor

org.biojava.bio.seq.io.ProteinRefSeqProcessor

All Implemented Interfaces:

SeqIOListener, SequenceBuilder, ParseErrorSource

public class ProteinRefSeqProcessor
extends GenbankProcessor

Deprecated.

Use org.biojavax.bio.seq.io framework instead

Class description

Author:

Greg Cox

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	ProteinRefSeqProcessor.Factory	Deprecated. Factory which wraps sequence builders in a ProteinRefSeqProcessor

Field Summary

Fields inherited from class org.biojava.bio.seq.io.GenbankProcessor

features, PROPERTY_GENBANK_ACCESSIONS

Constructor Summary

Constructors

Constructor	Description
ProteinRefSeqProcessor(SequenceBuilder theDelegate)	Deprecated.

Method Summary

Methods inherited from class org.biojava.bio.seq.io.GenbankProcessor

addParseErrorListener, addSequenceProperty, endSequence, notifyParseErrorEvent, removeParseErrorListener

Methods inherited from class org.biojava.bio.seq.io.SequenceBuilderFilter

addFeatureProperty, addSymbols, endFeature, getDelegate, makeSequence, setName, setURI, startFeature, startSequence

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinRefSeqProcessor

public ProteinRefSeqProcessor(SequenceBuilder theDelegate)

Deprecated.