Package org.biojava.bio.seq.io.agave
Interface AGAVEBioSeqCallbackItf
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- All Known Implementing Classes:
AGAVEBioSeqHandler
public interface AGAVEBioSeqCallbackItf
An interface that can be tested for by nested handlers when trying to do a callback. This one handles callbacks from nested elements that determine strandedness of a nesting element.- Author:
- Hanning Ni Doubletwist Inc
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description void
reportDna(String dna)
void
reportFeature(Location loc)
Allows nesting class that manages a gene template to gain information about its extent from nested elements.void
reportStrand(StrandedFeature.Strand strand)
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Method Detail
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reportFeature
void reportFeature(Location loc)
Allows nesting class that manages a gene template to gain information about its extent from nested elements. Strand is reported separately as some gene features may not have strand.
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reportStrand
void reportStrand(StrandedFeature.Strand strand)
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