Hierarchy For Package org.biojava.bio.seq.io.agave

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.biojava.bio.seq.io.agave.AGAVEDbId
  • org.biojava.bio.seq.io.agave.AGAVEIdAlias
  • org.biojava.bio.seq.io.agave.AGAVEMapLocation
  • org.biojava.bio.seq.io.agave.AGAVEMapPosition
  • org.biojava.bio.seq.io.agave.AGAVEMatchRegion
  • org.biojava.bio.seq.io.agave.AGAVEProperty
  • org.biojava.bio.seq.io.agave.AGAVEQueryRegion
  • org.biojava.bio.seq.io.agave.AGAVERelatedAnnot
  • org.biojava.bio.seq.io.agave.AgaveWriter
  • org.biojava.bio.seq.io.agave.AgaveWriter.Indent
  • org.biojava.bio.seq.io.agave.AGAVEXref
  • org.biojava.bio.seq.io.agave.AGAVEXrefs
  • org.biojava.bio.seq.io.agave.ElementRecognizer.AllElementRecognizer (implements org.biojava.bio.seq.io.agave.ElementRecognizer)
  • org.biojava.bio.seq.io.agave.ElementRecognizer.ByLocalName (implements org.biojava.bio.seq.io.agave.ElementRecognizer)
  • org.biojava.bio.seq.io.agave.ElementRecognizer.ByNSName (implements org.biojava.bio.seq.io.agave.ElementRecognizer)
  • org.biojava.bio.seq.io.agave.ElementRecognizer.HasAttribute (implements org.biojava.bio.seq.io.agave.ElementRecognizer)
  • org.biojava.bio.seq.io.agave.SAX2StAXAdaptor (implements org.xml.sax.ContentHandler)
  • org.biojava.bio.seq.io.agave.SimpleAnnotFilter (implements org.biojava.bio.seq.io.agave.AGAVEAnnotFilter)
    • org.biojava.bio.seq.io.agave.Agave2AgaveAnnotFilter
    • org.biojava.bio.seq.io.agave.Embl2AgaveAnnotFilter
  • org.biojava.bio.seq.io.agave.StAXContentHandlerBase (implements org.biojava.bio.seq.io.agave.StAXContentHandler)
    • org.biojava.bio.seq.io.agave.StAXFeatureHandler
      • org.biojava.bio.seq.io.agave.AGAVEAssemblyHandler (implements org.biojava.bio.seq.io.agave.SequenceHandler)
      • org.biojava.bio.seq.io.agave.AGAVEBioSeqHandler (implements org.biojava.bio.seq.io.agave.AGAVEBioSeqCallbackItf, org.biojava.bio.seq.io.agave.SequenceHandler)
      • org.biojava.bio.seq.io.agave.AGAVEBioSequenceHandler
      • org.biojava.bio.seq.io.agave.AGAVECdsHandler
      • org.biojava.bio.seq.io.agave.AGAVEChromosomeHandler (implements org.biojava.bio.seq.io.agave.AGAVEChromosomeCallbackItf, org.biojava.bio.seq.io.agave.SequenceHandler)
      • org.biojava.bio.seq.io.agave.AGAVEClassificationHandler (implements org.biojava.bio.seq.io.agave.AGAVEIdAliasCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVECompResultHandler (implements org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEComputationHandler
      • org.biojava.bio.seq.io.agave.AGAVEContigHandler (implements org.biojava.bio.seq.io.agave.AGAVEContigCallbackItf, org.biojava.bio.seq.io.agave.SequenceHandler)
      • org.biojava.bio.seq.io.agave.AGAVEEvidenceHandler (implements org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEFragmentOrderHandler
      • org.biojava.bio.seq.io.agave.AGAVEFragmentOrientationHandler (implements org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEGeneHandler (implements org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEHandler (implements org.biojava.bio.seq.io.agave.AGAVECallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEMrnaHandler
      • org.biojava.bio.seq.io.agave.AGAVEPredictedProteinHandler
      • org.biojava.bio.seq.io.agave.AGAVEQueryRegionPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEResultGroupHandler
      • org.biojava.bio.seq.io.agave.AGAVESeqFeatureHandler (implements org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVESeqMapHandler
      • org.biojava.bio.seq.io.agave.AGAVETranscriptHandler (implements org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEUnorderedFragmentsHandler
    • org.biojava.bio.seq.io.agave.StAXPropertyHandler
      • org.biojava.bio.seq.io.agave.AGAVEAltIdsPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEAnnotationsHandler
      • org.biojava.bio.seq.io.agave.AGAVEDbIdPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEDescPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEElementIdPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEExonsPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEIdAliasPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEKeywordPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEMapLocationPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEMapPositionPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEMatchAlignPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEMatchDescPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEMatchRegionPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf, org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVENotePropHandler
      • org.biojava.bio.seq.io.agave.AGAVEQualifierPropHandler
      • org.biojava.bio.seq.io.agave.AGAVERelatedAnnotPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEResultPropertyPropHandler
      • org.biojava.bio.seq.io.agave.AGAVESciPropertyPropHandler
      • org.biojava.bio.seq.io.agave.AGAVESeqLocationPropHandler
      • org.biojava.bio.seq.io.agave.AGAVESeqPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEViewPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEXrefPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf, org.biojava.bio.seq.io.agave.AGAVEDbIdPropCallbackItf)
      • org.biojava.bio.seq.io.agave.AGAVEXrefPropPropHandler
      • org.biojava.bio.seq.io.agave.AGAVEXrefsPropHandler (implements org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf, org.biojava.bio.seq.io.agave.AGAVEXrefCallbackItf)
  • org.biojava.bio.seq.io.agave.UtilHelper

Interface Hierarchy

• org.biojava.bio.seq.io.agave.AGAVEAnnotFilter
• org.biojava.bio.seq.io.agave.AGAVEAnnotFilterFactory
• org.biojava.bio.seq.io.agave.AGAVEBioSeqCallbackItf
• org.biojava.bio.seq.io.agave.AGAVECallbackItf
• org.biojava.bio.seq.io.agave.AGAVEChromosomeCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEContigCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEDbIdPropCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEIdAliasCallbackItf
• org.biojava.bio.seq.io.agave.AGAVEXrefCallbackItf
• org.biojava.bio.seq.io.agave.DelegationManager
• org.biojava.bio.seq.io.agave.ElementRecognizer
• org.biojava.bio.seq.io.agave.SequenceHandler
• org.biojava.bio.seq.io.agave.StAXContentHandler
• org.biojava.bio.seq.io.agave.StAXHandlerFactory