Package org.biojava.bio.seq.io.agave

Class AGAVEComputationHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXFeatureHandler

org.biojava.bio.seq.io.agave.AGAVEComputationHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVEComputationHandler
extends StAXFeatureHandler

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	AGAVE_COMPUTATION_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

Modifier and Type	Method	Description
void	startElementHandler(String nsURI, String localName, String qName, Attributes attrs)	currently we do not handler >computation< as subtag of sciobj yet

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_COMPUTATION_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_COMPUTATION_HANDLER_FACTORY

Method Detail

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)
                         throws SAXException

currently we do not handler >computation< as subtag of sciobj yet

Overrides:

startElementHandler in class StAXFeatureHandler

Throws:

SAXException