Package org.biojava.bio.seq.io.agave
Class AGAVEMapLocation
- java.lang.Object
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- org.biojava.bio.seq.io.agave.AGAVEMapLocation
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public class AGAVEMapLocation extends Object
- Author:
- Hanning Ni Doubletwist Inc, Greg Cox
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Constructor Summary
Constructors Constructor Description AGAVEMapLocation()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description voidaddPosition(AGAVEMapPosition pos)StringgetChromosome()StringgetMapType()StringgetOrientation()AGAVEMapPositiongetPosition1()AGAVEMapPositiongetPosition2()StringgetSource()StringgetSubSeqStart()StringgetUnits()voidsetChromosome(String value)voidsetMapType(String value)voidsetOrientation(String value)voidsetSource(String value)voidsetSubSeqStart(String value)voidsetUnits(String value)StringtoString()StringtoString(String indent, String indent_unit)
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Constructor Detail
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AGAVEMapLocation
public AGAVEMapLocation()
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Method Detail
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addPosition
public void addPosition(AGAVEMapPosition pos)
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getPosition1
public AGAVEMapPosition getPosition1()
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getPosition2
public AGAVEMapPosition getPosition2()
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setMapType
public void setMapType(String value)
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getMapType
public String getMapType()
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setChromosome
public void setChromosome(String value)
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getChromosome
public String getChromosome()
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setSubSeqStart
public void setSubSeqStart(String value)
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getSubSeqStart
public String getSubSeqStart()
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setOrientation
public void setOrientation(String value)
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getOrientation
public String getOrientation()
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