Package org.biojava.bio.seq.io.agave

Class AGAVESeqPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVESeqPropHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVESeqPropHandler
extends StAXPropertyHandler

Deals with sequence code

Author:

Hanning Ni Doubletwist Inc, Greg Cox

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	AGAVE_SEQ_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Modifier and Type	Method	Description
void	characters(char[] ch, int start, int length)	Signal a span of character data in the XML input.
void	endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler)	Element specific exit handler Subclass to do anything useful.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_SEQ_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_SEQ_PROP_HANDLER_FACTORY

Method Detail

characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws SAXException

Description copied from class: StAXContentHandlerBase

Signal a span of character data in the XML input.

Specified by:

characters in interface StAXContentHandler

Overrides:

characters in class StAXContentHandlerBase

Parameters:

ch - an array of characters

start - index of the first significant character for this event.

length - number of characters significant to this event.

Throws:

SAXException

endElementHandler

public void endElementHandler(String nsURI,
                              String localName,
                              String qName,
                              StAXContentHandler handler)
                       throws SAXException

Description copied from class: StAXPropertyHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXPropertyHandler

Throws:

SAXException