Package org.biojava.bio.seq.io.agave

Class AGAVEUnorderedFragmentsHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXFeatureHandler

org.biojava.bio.seq.io.agave.AGAVEUnorderedFragmentsHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVEUnorderedFragmentsHandler
extends StAXFeatureHandler

unordered_fragments

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, endElementHandler, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY