Package org.biojava.bio.seq.io.agave

Class AGAVEViewPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEViewPropHandler

All Implemented Interfaces:

StAXContentHandler

public class AGAVEViewPropHandler
extends StAXPropertyHandler

Moves view attributes into annotation properties.

start --> view_start

end --> view_end

Author:

Hanning Ni Doubletwist Inc, Keith James, Matthew Pocock

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	AGAVE_VIEW_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Modifier and Type	Method	Description
void	startElementHandler(String nsURI, String localName, String qName, Attributes attrs)	Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, endElementHandler, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_VIEW_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_VIEW_PROP_HANDLER_FACTORY

Method Detail

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)
                         throws SAXException

Description copied from class: StAXPropertyHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXPropertyHandler

Throws:

SAXException