Package org.biojava.bio.seq.io.agave

Class AGAVEXrefPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEXrefPropHandler

All Implemented Interfaces:

AGAVEDbIdCallbackItf, AGAVEDbIdPropCallbackItf, StAXContentHandler

public class AGAVEXrefPropHandler
extends StAXPropertyHandler
implements AGAVEDbIdCallbackItf, AGAVEDbIdPropCallbackItf

handle AGAVE xref

Author:

Hanning Ni , Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	AGAVE_XREF_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Modifier and Type	Method	Description
void	addDbId(AGAVEDbId db_id)
void	addProperty(AGAVEProperty prop)
void	endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler)	Element specific exit handler Subclass to do anything useful.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_XREF_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_XREF_PROP_HANDLER_FACTORY

Method Detail

addDbId

public void addDbId(AGAVEDbId db_id)

Specified by:

addDbId in interface AGAVEDbIdCallbackItf

addProperty

public void addProperty(AGAVEProperty prop)

Specified by:

addProperty in interface AGAVEDbIdPropCallbackItf

Parameters:

prop - here is xref_property

endElementHandler

public void endElementHandler(String nsURI,
                              String localName,
                              String qName,
                              StAXContentHandler handler)
                       throws SAXException

Description copied from class: StAXPropertyHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXPropertyHandler

Throws:

SAXException