Package org.biojava.bio.seq.io.filterxml

Tools for reading and writing an XML representation of BioJava's FeatureFilter language.

These classes allow reading and writing of FeatureFilters in a human-readable XML form. This is primarily intended for implementing web services which allow remote access to BioJava data, but could be used as an easier way to represent complex FeatureFilters than writing out constructors explicitly.

Interface Summary

Interface	Description
XMLAnnotationTypeHandler.CollectionConstraintHandler	Handler for an individual CollectionConstraint in an AnnotationType.
XMLAnnotationTypeHandler.CollectionConstraintHandlerFactory	Handler Factory for a CollectionConstraint in an AnnotationType.
XMLAnnotationTypeHandler.PropertyConstraintHandler	Handler for an individual PropertyConstraint in an AnnotationType.
XMLAnnotationTypeHandler.PropertyConstraintHandlerFactory	Handler Factory for a PropertyConstraint in an AnnotationType.
XMLAnnotationTypeWriter.XMLCollectionConstraintWriter	Writer for types of CollectionConstraint.
XMLAnnotationTypeWriter.XMLPropertyConstraintWriter	Writer for types of PropertyConstraint.
XMLFilterHandler.FilterHandler	StAXContentHandler for a particular type of FeatureFilter.
XMLFilterHandler.FilterHandlerFactory	Factory of StAXContentHandlers for a particular type of FeatureFilter.
XMLFilterWriter.FilterWriter	Interface for an object which can write a FeatureFilter as XML.

Class Summary

Class	Description
XMLAnnotationTypeHandler	StAX handler for parsing AnnotationTypes in FilterXML documents.
XMLAnnotationTypeWriter	Main class for writing AnnotationTypes as XML.
XMLFilterHandler	Factory producing content handlers for parsing FilterXML elements.
XMLFilterWriter	Write FeatureFilters in XML format.