Package org.biojava.bio.seq.io.game12

Class GAMESeqHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.seq.io.game12.StAXFeatureHandler

org.biojava.bio.seq.io.game12.GAMESeqHandler

All Implemented Interfaces:

StAXContentHandler

public class GAMESeqHandler
extends StAXFeatureHandler

Handles the GAME <seq> element

Since:

1.2

Author:

David Huen

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	GAME_SEQ_HANDLER_FACTORY	Description of the Field

Fields inherited from class org.biojava.bio.seq.io.game12.StAXFeatureHandler

staxenv

Method Summary

Modifier and Type	Method	Description
void	endElementHandler(String nsURI, String localName, String qName, StAXContentHandler staxHandler)	Element specific exit handler Subclass to do anything useful.
int	getSequenceLength()	Gets the sequenceLength attribute of the GAMESeqHandler object
void	startElementHandler(String nsURI, String localName, String qName, Attributes attrs)	Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.game12.StAXFeatureHandler

addHandler, endElement, returnData, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GAME_SEQ_HANDLER_FACTORY

public static final StAXHandlerFactory GAME_SEQ_HANDLER_FACTORY

Description of the Field

Method Detail

getSequenceLength

public int getSequenceLength()

Gets the sequenceLength attribute of the GAMESeqHandler object

Returns:

The sequenceLength value

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)
                         throws SAXException

Description copied from class: StAXFeatureHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXFeatureHandler

Parameters:

nsURI - Description of the Parameter

localName - Description of the Parameter

qName - Description of the Parameter

attrs - Description of the Parameter

Throws:

SAXException - Description of the Exception

endElementHandler

public void endElementHandler(String nsURI,
                              String localName,
                              String qName,
                              StAXContentHandler staxHandler)
                       throws SAXException

Description copied from class: StAXFeatureHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXFeatureHandler

Parameters:

nsURI - Description of the Parameter

localName - Description of the Parameter

qName - Description of the Parameter

staxHandler - Description of the Parameter

Throws:

SAXException - Description of the Exception