Uses of Interface
org.biojava.bio.symbol.CodonPref

Packages that use CodonPref

Package	Description
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Uses of CodonPref in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement CodonPref

Modifier and Type	Class	Description
class	SimpleCodonPref	a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.

Methods in org.biojava.bio.symbol that return CodonPref

Modifier and Type	Method	Description
CodonPref	CodonPrefFilter.ByName.getCodonPref()
static CodonPref	CodonPrefTools.getCodonPreference(String id)	get the specified codon preference.
static CodonPref[]	CodonPrefTools.readFromXML(InputStream prefStream)
static CodonPref	CodonPrefTools.readFromXML(InputStream prefStream, String name)	reads a specified CodonPref from an file.

Methods in org.biojava.bio.symbol with parameters of type CodonPref

Modifier and Type	Method	Description
void	CodonPrefFilter.AcceptAll.put(CodonPref codonPref)
void	CodonPrefFilter.ByName.put(CodonPref codonPref)
void	CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)
void	CodonPrefFilter.put(CodonPref codonPref)	handles storage of a CodonPref object
static void	CodonPrefTools.writeToXML(CodonPref codonPref, PrintWriter writer)	write out a specified CodonPref object in XML format.