CodonPref (biojava-legacy 1.9.5 API)

All Known Implementing Classes:

SimpleCodonPref
```
public interface CodonPref
```

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`Distribution`	`getFrequency()`	returns a Distribution giving the frequency of codons (sums to one over the totality of codons).
`Distribution`	`getFrequencyForSynonyms(Symbol residue)`	returns a Distribution giving the frequency of synonymous codons.
`ManyToOneTranslationTable`	`getGeneticCode()`	the genetic code that this codon preference is based on.
`String`	`getGeneticCodeName()`	get the name of the genetic code
`String`	`getName()`	get name of object
`WobbleDistribution`	`getWobbleDistributionForSynonyms(Symbol residue)`	returns a WobbleDistribution for a specified residue.

- Method Detail
  - getName
```
String getName()
```
    get name of object
  - getGeneticCodeName
```
String getGeneticCodeName()
```
    get the name of the genetic code
  - getGeneticCode
```
ManyToOneTranslationTable getGeneticCode()
```
    the genetic code that this codon preference is based on.
  - getFrequency
```
Distribution getFrequency()
```
    returns a Distribution giving the frequency of codons (sums to one over the totality of codons).
  - getFrequencyForSynonyms
```
Distribution getFrequencyForSynonyms(Symbol residue)
                              throws IllegalSymbolException
```
    returns a Distribution giving the frequency of synonymous codons. (sums to one over the total number of codons that encode that residue).
    
    Throws:
    
    IllegalSymbolException
  - getWobbleDistributionForSynonyms
```
WobbleDistribution getWobbleDistributionForSynonyms(Symbol residue)
                                             throws IllegalSymbolException
```
    returns a WobbleDistribution for a specified residue.
    
    Throws:
    
    IllegalSymbolException