Package org.biojava.bio.taxa
Taxonomy object for representing species information.
Description
Many file formats such as embl and genbank include information about species and their classifications. The objects in this package are designed to represent that information regardless of where the data is actualy stoored. It follows a model where the TaxonFactory is responsible for creating and managing Taxon instances, and Taxon instances are potentialy ultra-light-weight objects.
The package is deprecated. It is replaced by org.biojavax.bio.taxa. This package has better persistence to biosql.
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Interface Summary Interface Description Taxon Deprecated. replaced by classes inorg.biojavax.bio.taxa
TaxonFactory Deprecated. replaced by classes inorg.biojavax.bio.taxa
TaxonParser Deprecated. replaced by classes inorg.biojavax.bio.taxa
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Class Summary Class Description AbstractTaxon Deprecated. replaced by classes inorg.biojavax.bio.taxa
EbiFormat Deprecated. replaced by classes inorg.biojavax.bio.taxa
SimpleTaxon Deprecated. replaced by classes inorg.biojavax.bio.taxa
SimpleTaxonFactory Deprecated. replaced by classes inorg.biojavax.bio.taxa
WeakTaxon Deprecated. replaced by classes inorg.biojavax.bio.taxa
WeakTaxonFactory Deprecated. replaced by classes inorg.biojavax.bio.taxa
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Exception Summary Exception Description CircularReferenceException Deprecated. replaced by classes inorg.biojavax.bio.taxa