Package org.biojava.ontology

Class Triple.Impl

java.lang.Object

org.biojava.utils.Unchangeable

org.biojava.ontology.Triple.Impl

All Implemented Interfaces:

Serializable, Annotatable, Term, Triple, Changeable

Enclosing interface:

Triple

public static final class Triple.Impl
extends Unchangeable
implements Triple, Serializable

Basic in-memory implementation of a Triple in an ontology This can be used to implement Ontology.createTriple

See Also:

SimpleComparableTriple, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

Annotatable.AnnotationForwarder

Nested classes/interfaces inherited from interface org.biojava.ontology.Triple

Triple.Impl

Field Summary

Fields inherited from interface org.biojava.bio.Annotatable

ANNOTATION

Fields inherited from interface org.biojava.ontology.Term

ONTOLOGY

Constructor Summary

Constructors

Constructor	Description
Impl(Term subject, Term object, Term predicate)
Impl(Term subject, Term object, Term predicate, Object[] synonyms)
Impl(Term subject, Term object, Term predicate, String name, String description)
Impl(Term subject, Term object, Term predicate, String name, String description, Object[] synonyms)

Method Summary

Modifier and Type	Method	Description
void	addSynonym(Object synonym)	Add a synonym for this term.
boolean	equals(Object o)	Two triples are equal if all their fields are identical.
Annotation	getAnnotation()	Should return the associated annotation object.
String	getDescription()	Return a human-readable description of this term, or the empty string if none is available.
String	getName()	Return the name of this term.
Term	getObject()	Return the object term of this triple.
Ontology	getOntology()	Return the ontology in which this term exists.
Term	getPredicate()	Return a Term which defines the type of relationship between the subject and object terms.
Term	getSubject()	Return the subject term of this triple
Object[]	getSynonyms()	Return the synonyms for this term.
int	hashCode()	The hashcode for a Triple.
void	removeSynonym(Object synonym)	Remove a synonym for this term.
void	setDescription(String desc)	set the description of the term;
String	toString()

Methods inherited from class org.biojava.utils.Unchangeable

addChangeListener, addChangeListener, addForwarder, getForwarders, getListeners, isUnchanging, removeChangeListener, removeChangeListener, removeForwarder

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

Impl

public Impl(Term subject,
            Term object,
            Term predicate)

Impl

public Impl(Term subject,
            Term object,
            Term predicate,
            Object[] synonyms)

Impl

public Impl(Term subject,
            Term object,
            Term predicate,
            String name,
            String description)

Impl

public Impl(Term subject,
            Term object,
            Term predicate,
            String name,
            String description,
            Object[] synonyms)

Method Detail

addSynonym

public void addSynonym(Object synonym)

Description copied from interface: Term

Add a synonym for this term.

Specified by:

addSynonym in interface Term

Parameters:

synonym - the synonym

removeSynonym

public void removeSynonym(Object synonym)

Description copied from interface: Term

Remove a synonym for this term.

Specified by:

removeSynonym in interface Term

getSynonyms

public Object[] getSynonyms()

Description copied from interface: Term

Return the synonyms for this term.

Specified by:

getSynonyms in interface Term

Returns:

the synonyms

getName

public String getName()

Description copied from interface: Term

Return the name of this term.

Specified by:

getName in interface Term

Returns:

the name of the term

getDescription

public String getDescription()

Description copied from interface: Term

Return a human-readable description of this term, or the empty string if none is available.

Specified by:

getDescription in interface Term

Returns:

the description of the term

setDescription

public void setDescription(String desc)

Description copied from interface: Term

set the description of the term;

Specified by:

setDescription in interface Term

getOntology

public Ontology getOntology()

Description copied from interface: Term

Return the ontology in which this term exists.

Specified by:

getOntology in interface Term

Returns:

the ontology

getSubject

public Term getSubject()

Description copied from interface: Triple

Return the subject term of this triple

Specified by:

getSubject in interface Triple

Returns:

the subject term

getObject

public Term getObject()

Description copied from interface: Triple

Return the object term of this triple.

Specified by:

getObject in interface Triple

Returns:

the object term

getPredicate

public Term getPredicate()

Description copied from interface: Triple

Return a Term which defines the type of relationship between the subject and object terms.

Specified by:

getPredicate in interface Triple

Returns:

the predicate

getAnnotation

public Annotation getAnnotation()

Description copied from interface: Annotatable

Should return the associated annotation object.

Specified by:

getAnnotation in interface Annotatable

Returns:

an Annotation object, never null

equals

public boolean equals(Object o)

Two triples are equal if all their fields are identical.

Specified by:

equals in interface Triple

Overrides:

equals in class Object

hashCode

public int hashCode()

Description copied from interface: Triple

The hashcode for a Triple.

This must be implemented as:

 return getSubject().hashCode() +
   31 * getObject().hashCode() +
   31 * 31 * getPredicate().hashCode();
 

If you do not implement hashcode in this way then you have no guarantee that your Triple objects will be found in an ontology and that they will not be duplicated.

Specified by:

hashCode in interface Triple

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object