Package org.biojavax.bio.alignment.blast

This package holds implementations of the org.biojava3.ws.alignment interfaces for the NCBI remote QBlast services through the WWW.

This will be included in Biojava 3

Class Summary

Class	Description
RemoteQBlastAlignmentProperties	This class implements RemotePairwiseAlignmentProperties by specifying several convenient methods used to wrap the addition of Blast alignment parameters.
RemoteQBlastOutputProperties	The actual implementation of the RemotePairwiseAlignmentOutputProperties interface for the QBlast service.
RemoteQBlastService	RemoteQBlastService - A simple way of submitting BLAST request to the QBlast service at NCBI.

Enum Summary

Enum	Description
RemoteQBlastOutputFormat	The RemoteQBlastOutputFormat enum acts like static fields for specifiying various values for certain output options.