Package org.biojavax.bio.alignment.blast

Enum RemoteQBlastOutputFormat

java.lang.Object

java.lang.Enum<RemoteQBlastOutputFormat>

org.biojavax.bio.alignment.blast.RemoteQBlastOutputFormat

All Implemented Interfaces:

Serializable, Comparable<RemoteQBlastOutputFormat>

public enum RemoteQBlastOutputFormat
extends Enum<RemoteQBlastOutputFormat>

The RemoteQBlastOutputFormat enum acts like static fields for specifiying various values for certain output options.

Enum Constant Summary

Enum Constants

Enum Constant	Description
FLAT_QUERY_ANCHORED
FLAT_QUERY_ANCHORED_NO_IDENTITIES
HTML
PAIRWISE
QUERY_ANCHORED
QUERY_ANCHORED_NO_IDENTITIES
TABULAR
TEXT
XML

Method Summary

Modifier and Type	Method	Description
static RemoteQBlastOutputFormat	valueOf(String name)	Returns the enum constant of this type with the specified name.
static RemoteQBlastOutputFormat[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

TEXT

public static final RemoteQBlastOutputFormat TEXT

XML

public static final RemoteQBlastOutputFormat XML

HTML

public static final RemoteQBlastOutputFormat HTML

PAIRWISE

public static final RemoteQBlastOutputFormat PAIRWISE

QUERY_ANCHORED

public static final RemoteQBlastOutputFormat QUERY_ANCHORED

QUERY_ANCHORED_NO_IDENTITIES

public static final RemoteQBlastOutputFormat QUERY_ANCHORED_NO_IDENTITIES

FLAT_QUERY_ANCHORED

public static final RemoteQBlastOutputFormat FLAT_QUERY_ANCHORED

FLAT_QUERY_ANCHORED_NO_IDENTITIES

public static final RemoteQBlastOutputFormat FLAT_QUERY_ANCHORED_NO_IDENTITIES

TABULAR

public static final RemoteQBlastOutputFormat TABULAR

Method Detail

values

public static RemoteQBlastOutputFormat[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (RemoteQBlastOutputFormat c : RemoteQBlastOutputFormat.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static RemoteQBlastOutputFormat valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null