Package org.biojavax.bio.alignment

This package contains the interfaces that need to be implemented by discrete alignment services. The development philosophy is to separate actual submission of alignment requests from getting the corresponding results in any format supported by the service.

Interface Summary

Interface	Description
RemotePairwiseAlignmentOutputProperties	RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.
RemotePairwiseAlignmentProperties	RemotePairwiseAlignmentProperties is a interface that contains the barest of methods for setting and getting Alignment properties.
RemotePairwiseAlignmentService	This interface specifies minimal information needed to execute a pairwise alignment on a remote service.