Package org.biojavax.bio.alignment

Interface RemotePairwiseAlignmentOutputProperties

All Superinterfaces:

Serializable

All Known Implementing Classes:

RemoteQBlastOutputProperties

public interface RemotePairwiseAlignmentOutputProperties
extends Serializable

RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.

Since:

1.8

Author:

Sylvain Foisy, Diploide BioIT

Field Summary

Fields

Modifier and Type	Field	Description
static long	serialVersionUID

Method Summary

Modifier and Type	Method	Description
String	getOutputOption(String key)	Method that returns the value associated with the key given in parameter.
Set<String>	getOutputOptions()	Method to get all keys to the information stored in this object.
void	setOutputOption(String key, String val)	Method to set the value for a specific output parameter using a key to store in a map.

Field Detail

serialVersionUID

static final long serialVersionUID

See Also:

Constant Field Values

Method Detail

getOutputOption

String getOutputOption(String key)
                throws BioException

Method that returns the value associated with the key given in parameter.

Parameters:

key - :a String with the required key for this map.

Returns:

a String with the value associated with this key

Throws:

BioException - if key is not in the map of output options.

setOutputOption

void setOutputOption(String key,
                     String val)

Method to set the value for a specific output parameter using a key to store in a map.

Parameters:

key - :the key use to designate the value to be stored

val - :the actual value matched to key

getOutputOptions

Set<String> getOutputOptions()

Method to get all keys to the information stored in this object.

Returns:

a Set with all keys held in this instance of the object