Package org.biojavax.bio.phylo.io.nexus

Class DataBlock

java.lang.Object

org.biojavax.bio.phylo.io.nexus.NexusBlock.Abstract

org.biojavax.bio.phylo.io.nexus.CharactersBlock

org.biojavax.bio.phylo.io.nexus.DataBlock

All Implemented Interfaces:

NexusBlock, NexusObject

public class DataBlock
extends CharactersBlock

Represents Nexus data blocks.

Since:

1.6

Author:

Richard Holland, Tobias Thierer, Jim Balhoff

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojavax.bio.phylo.io.nexus.NexusBlock

NexusBlock.Abstract

Field Summary

Fields

Modifier and Type	Field	Description
static String	DATA_BLOCK	A constant representing the name of Data blocks.

Fields inherited from class org.biojavax.bio.phylo.io.nexus.CharactersBlock

CHARACTERS_BLOCK

Constructor Summary

Constructors

Constructor	Description
DataBlock()	Delegates to NexusBlock.Abstract constructor using DataBlock.DATA_BLOCK as the name.

Method Summary

Methods inherited from class org.biojavax.bio.phylo.io.nexus.CharactersBlock

addCharLabel, addCharState, addCharStateKeyword, addComment, addEquate, addItem, addMatrixEntry, addState, addStateLabel, addSymbol, addTaxLabel, appendMatrixData, containsCharLabel, containsTaxLabel, getAllCharStates, getCharLabels, getCharStateLabel, getCharStateLabelKeywords, getComments, getDataType, getDimensionsNChar, getDimensionsNTax, getEliminateEnd, getEliminateStart, getEquates, getGap, getItems, getMatchChar, getMatrixData, getMatrixLabels, getMissing, getStateLabels, getStatesFormat, getSymbols, getTaxLabels, isInterleaved, isLabels, isRespectCase, isTokens, isTransposed, removeAllItems, removeAllSymbols, removeCharLabel, removeCharState, removeComment, removeEquate, removeItem, removeState, removeSymbol, removeTaxLabel, setCharStateLabel, setDataType, setDimensionsNChar, setDimensionsNTax, setEliminateEnd, setEliminateStart, setGap, setInterleaved, setLabels, setMatchChar, setMissing, setRespectCase, setStatesFormat, setTokens, setTransposed, writeBlockContents

Methods inherited from class org.biojavax.bio.phylo.io.nexus.NexusBlock.Abstract

getBlockName, writeObject, writeToken

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DATA_BLOCK

public static final String DATA_BLOCK

A constant representing the name of Data blocks.

See Also:

Constant Field Values

Constructor Detail

DataBlock

public DataBlock()

Delegates to NexusBlock.Abstract constructor using DataBlock.DATA_BLOCK as the name.