SimpleOrganism (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.utils.AbstractChangeable
- - org.biojavax.ga.impl.AbstractOrganism
  - - org.biojavax.ga.impl.SimpleOrganism

All Implemented Interfaces:

Changeable, Organism
```
public class SimpleOrganism
extends AbstractOrganism
```
A Simple Haploid Organism implementation

Since:

1.5

Version:

1.0

Author:

Mark Schreiber

Field Summary
- Fields inherited from class org.biojavax.ga.impl.AbstractOrganism
  chromosomes
- Fields inherited from interface org.biojavax.ga.Organism
  CHROMOSOMES, NAME

Constructor Summary

Constructors
Constructor Description

SimpleOrganism()

SimpleOrganism(String name)

SimpleOrganism(Organism org, String name)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`isHaploid()`	Simple Organisms are Halpoid
`Organism`	`replicate(String name)`	Creates a replica of this `Organism` with a new name.
`protected void`	`setChromImpl(SymbolList[] chromosomes)`

Methods inherited from class org.biojavax.ga.impl.AbstractOrganism
getChromosomes, getFitness, getName, setChromosomes, setFitness, setName

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

- Constructor Detail
  - SimpleOrganism
```
public SimpleOrganism()
```
  - SimpleOrganism
```
public SimpleOrganism(String name)
```
  - SimpleOrganism
```
public SimpleOrganism(Organism org,
                      String name)
```
- Method Detail
  - setChromImpl
```
protected void setChromImpl(SymbolList[] chromosomes)
```
    Specified by:
    
    setChromImpl in class AbstractOrganism
  - isHaploid
```
public boolean isHaploid()
```
    Simple Organisms are Halpoid
    
    Specified by:
    
    isHaploid in interface Organism
    
    Specified by:
    
    isHaploid in class AbstractOrganism
    
    Returns:
    
    true
  - replicate
```
public Organism replicate(String name)
```
    Description copied from interface: Organism
    
    Creates a replica of this Organism with a new name.
    
    Parameters:
    
    name - the new name for the sequence.
    
    Returns:
    
    the replicated organism.