Package org.biojavax.ontology

Interface ComparableTerm

All Superinterfaces:

Annotatable, Changeable, Comparable, RankedCrossRefable, Term

All Known Implementing Classes:

SimpleComparableTerm

public interface ComparableTerm
extends Term, RankedCrossRefable, Comparable, Changeable

Makes Term objects comparable properly and adds some extra features to them.

Since:

1.5

Author:

Richard Holland

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

Annotatable.AnnotationForwarder

Nested classes/interfaces inherited from interface org.biojava.ontology.Term

Term.Impl

Field Summary

Fields

Modifier and Type	Field	Description
static ChangeType	DESCRIPTION
static ChangeType	IDENTIFIER
static ChangeType	OBSOLETE
static ChangeType	RANKEDCROSSREF

Fields inherited from interface org.biojava.bio.Annotatable

ANNOTATION

Fields inherited from interface org.biojava.ontology.Term

ONTOLOGY

Method Summary

Modifier and Type	Method	Description
String	getIdentifier()	Returns the (optional) identifier associated with this term.
Boolean	getObsolete()	Checks to see if this term is obsolete.
void	setDescription(String description)	Sets the description associated with this term.
void	setIdentifier(String identifier)	Sets the (optional) identifier associated with this term.
void	setObsolete(Boolean obsolete)	Sets the obsolescence flag associated with this term.

Methods inherited from interface org.biojava.bio.Annotatable

getAnnotation

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface org.biojavax.RankedCrossRefable

addRankedCrossRef, getRankedCrossRefs, removeRankedCrossRef, setRankedCrossRefs

Methods inherited from interface org.biojava.ontology.Term

addSynonym, getDescription, getName, getOntology, getSynonyms, removeSynonym

Field Detail

IDENTIFIER

static final ChangeType IDENTIFIER

OBSOLETE

static final ChangeType OBSOLETE

DESCRIPTION

static final ChangeType DESCRIPTION

RANKEDCROSSREF

static final ChangeType RANKEDCROSSREF

Method Detail

getIdentifier

String getIdentifier()

Returns the (optional) identifier associated with this term.

Returns:

the string identifier.

setIdentifier

void setIdentifier(String identifier)
            throws ChangeVetoException

Sets the (optional) identifier associated with this term.

Parameters:

identifier - the identifier to give the term. Null will unset it.

Throws:

ChangeVetoException - if the identifier is unacceptable.

getObsolete

Boolean getObsolete()

Checks to see if this term is obsolete. As the column in the database is nullable, this value is a Boolean object instead of a boolean simple type. Hence it may also be null.

Returns:

true if it is, false if not.

setObsolete

void setObsolete(Boolean obsolete)
          throws ChangeVetoException

Sets the obsolescence flag associated with this term.

Parameters:

obsolete - true if it is obsolete, false if not. Nullable.

Throws:

ChangeVetoException - if the change is unacceptable.

setDescription

void setDescription(String description)
             throws ChangeVetoException

Sets the description associated with this term.

Specified by:

setDescription in interface Term

Parameters:

description - the description to give the term. Nullable.

Throws:

ChangeVetoException - if the description is unacceptable.