org.biojava.nbio.alignment

Enum Alignments.PairwiseSequenceAlignerType

java.lang.Object

java.lang.Enum<Alignments.PairwiseSequenceAlignerType>

org.biojava.nbio.alignment.Alignments.PairwiseSequenceAlignerType

All Implemented Interfaces:

Serializable, Comparable<Alignments.PairwiseSequenceAlignerType>

Enclosing class:

Alignments

public static enum Alignments.PairwiseSequenceAlignerType
extends Enum<Alignments.PairwiseSequenceAlignerType>

List of implemented pairwise sequence alignment routines.

Enum Constant Summary

Enum Constants

Enum Constant and Description
GLOBAL
GLOBAL_LINEAR_SPACE
LOCAL
LOCAL_LINEAR_SPACE

Method Summary

Methods

Modifier and Type	Method and Description
static Alignments.PairwiseSequenceAlignerType	valueOf(String name) Returns the enum constant of this type with the specified name.
static Alignments.PairwiseSequenceAlignerType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GLOBAL

public static final Alignments.PairwiseSequenceAlignerType GLOBAL

GLOBAL_LINEAR_SPACE

public static final Alignments.PairwiseSequenceAlignerType GLOBAL_LINEAR_SPACE

LOCAL

public static final Alignments.PairwiseSequenceAlignerType LOCAL

LOCAL_LINEAR_SPACE

public static final Alignments.PairwiseSequenceAlignerType LOCAL_LINEAR_SPACE

Method Detail

values

public static Alignments.PairwiseSequenceAlignerType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Alignments.PairwiseSequenceAlignerType c : Alignments.PairwiseSequenceAlignerType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.PairwiseSequenceAlignerType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null