S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface MutableProfilePair<S extends Sequence<C>,C extends Compound> extends MutableProfile<S,C>, ProfilePair<S,C>
ProfilePair
.Profile.StringFormat
Modifier and Type | Method and Description |
---|---|
void |
setPair(Profile<S,C> query,
Profile<S,C> target)
Sets both
Profile s of the pair. |
void |
setQuery(Profile<S,C> query)
Sets the first
Profile of the pair. |
void |
setTarget(Profile<S,C> target)
Sets the second
Profile of the pair. |
setSequences
getQuery, getTarget
getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString
void setPair(Profile<S,C> query, Profile<S,C> target)
Profile
s of the pair.query
- becomes the first Profile
of the pairtarget
- becomes the second Profile
of the pairIllegalArgumentException
- if query and target are different lengthsvoid setQuery(Profile<S,C> query)
Profile
of the pair.query
- becomes the first Profile
of the pairIllegalArgumentException
- if (new) query and (old) target are different lengthsCopyright © 2000–2016 BioJava. All rights reserved.