org.biojava.nbio.genome.parsers.genename

Class GeneChromosomePosition

java.lang.Object

org.biojava.nbio.genome.parsers.genename.GeneChromosomePosition

All Implemented Interfaces:

Serializable, Comparable<GeneChromosomePosition>

public class GeneChromosomePosition
extends Object
implements Comparable<GeneChromosomePosition>, Serializable

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
GeneChromosomePosition()

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(GeneChromosomePosition o)
Integer	getCdsEnd()
Integer	getCdsStart()
String	getChromosome()
int	getExonCount()
List<Integer>	getExonEnds()
List<Integer>	getExonStarts()
String	getGenebankId()
String	getGeneName()
Character	getOrientation()
Integer	getTranscriptionEnd()
Integer	getTranscriptionStart()
void	setCdsEnd(Integer cdsEnd)
void	setCdsStart(Integer cdsStart)
void	setChromosome(String chromosome)
void	setExonCount(int exonCount)
void	setExonEnds(List<Integer> exonEnds)
void	setExonStarts(List<Integer> exonStarts)
void	setGenebankId(String genebankId)
void	setGeneName(String geneName)
void	setOrientation(Character orientation)
void	setTranscriptionEnd(Integer transcriptionEnd)
void	setTranscriptionStart(Integer transcriptionStart)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GeneChromosomePosition

public GeneChromosomePosition()

Method Detail

getGeneName

public String getGeneName()

setGeneName

public void setGeneName(String geneName)

getGenebankId

public String getGenebankId()

setGenebankId

public void setGenebankId(String genebankId)

getChromosome

public String getChromosome()

setChromosome

public void setChromosome(String chromosome)

getOrientation

public Character getOrientation()

setOrientation

public void setOrientation(Character orientation)

getTranscriptionStart

public Integer getTranscriptionStart()

setTranscriptionStart

public void setTranscriptionStart(Integer transcriptionStart)

getTranscriptionEnd

public Integer getTranscriptionEnd()

setTranscriptionEnd

public void setTranscriptionEnd(Integer transcriptionEnd)

getCdsStart

public Integer getCdsStart()

setCdsStart

public void setCdsStart(Integer cdsStart)

getCdsEnd

public Integer getCdsEnd()

setCdsEnd

public void setCdsEnd(Integer cdsEnd)

getExonCount

public int getExonCount()

setExonCount

public void setExonCount(int exonCount)

getExonStarts

public List<Integer> getExonStarts()

setExonStarts

public void setExonStarts(List<Integer> exonStarts)

getExonEnds

public List<Integer> getExonEnds()

setExonEnds

public void setExonEnds(List<Integer> exonEnds)

compareTo

public int compareTo(GeneChromosomePosition o)

Specified by:

compareTo in interface Comparable<GeneChromosomePosition>

toString

public String toString()

Overrides:

toString in class Object