org.biojava.nbio.ronn

Class RonnConstraint

java.lang.Object

org.biojava.nbio.ronn.RonnConstraint

public final class RonnConstraint
extends Object

A collection of various constrain values used by RONN

Since:

3.0.2

Version:

1.0

Author:

Peter Troshin

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	RonnConstraint.Threshold

Field Summary

Fields

Modifier and Type	Field and Description
static short[][]	Blosum62
static float	DEFAULT_DISORDER
static float	DEFAULT_ORDER
static float	DEFAULT_RANGE_PROBABILITY_THRESHOLD
static short[]	INDEX

Constructor Summary

Constructors

Constructor and Description
RonnConstraint()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_DISORDER

public static final float DEFAULT_DISORDER

See Also:

Constant Field Values

DEFAULT_ORDER

public static final float DEFAULT_ORDER

See Also:

Constant Field Values

DEFAULT_RANGE_PROBABILITY_THRESHOLD

public static final float DEFAULT_RANGE_PROBABILITY_THRESHOLD

See Also:

Constant Field Values

INDEX

public static final short[] INDEX

Blosum62

public static final short[][] Blosum62

Constructor Detail

RonnConstraint

public RonnConstraint()