S- each element of the alignment
Profileis of type S
C- each element of an
Compoundof type C
Alignerwhich builds a score matrix during computation.
|Modifier and Type||Method and Description|
Returns the entire score matrix built during alignment.
Returns a depiction of the score matrix as a
String. This may include additional description such as labels for each dimension: element from query sequence, element from target sequence, and meaning of each score.
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