org.biojava.nbio.core.search.io.blast

Class BlastResult

java.lang.Object

org.biojava.nbio.core.search.io.Result

org.biojava.nbio.core.search.io.blast.BlastResult

All Implemented Interfaces:

Iterable<Hit>

public class BlastResult
extends Result

This class models a Blast/Blast plus result. You will find one of this for every query sequence specified in the run. Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors

Constructor and Description
BlastResult(String program, String version, String reference, String dbFile, HashMap<String,String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence)

Method Summary

Methods inherited from class org.biojava.nbio.core.search.io.Result

equals, getDbFile, getHitCounter, getIterationNumber, getProgram, getProgramSpecificParameter, getProgramSpecificParametersList, getQueryDef, getQueryID, getQueryLength, getQuerySequence, getReference, getVersion, hashCode, iterator

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

BlastResult

public BlastResult(String program,
                   String version,
                   String reference,
                   String dbFile,
                   HashMap<String,String> programSpecificParameters,
                   int iterationNumber,
                   String queryID,
                   String queryDef,
                   int queryLength,
                   List<Hit> hits,
                   Sequence querySequence)