Uses of Class
org.biojava.nbio.core.sequence.TranscriptSequence

Packages that use TranscriptSequence

Package	Description
org.biojava.nbio.core.sequence

Uses of TranscriptSequence in org.biojava.nbio.core.sequence

Methods in org.biojava.nbio.core.sequence that return TranscriptSequence

Modifier and Type	Method and Description
TranscriptSequence	GeneSequence.addTranscript(AccessionID accession, int begin, int end) Add a transcription sequence to a gene which describes a ProteinSequence
TranscriptSequence	GeneSequence.getTranscript(String accession) Get the transcript sequence by accession
TranscriptSequence	GeneSequence.removeTranscript(String accession) Remove the transcript sequence from the gene

Methods in org.biojava.nbio.core.sequence that return types with arguments of type TranscriptSequence

Modifier and Type	Method and Description
LinkedHashMap<String,TranscriptSequence>	GeneSequence.getTranscripts() Get the collection of transcription sequences assigned to this gene

Constructors in org.biojava.nbio.core.sequence with parameters of type TranscriptSequence

Constructor and Description
CDSSequence(TranscriptSequence parentSequence, int bioBegin, int bioEnd, int phase)
StartCodonSequence(TranscriptSequence parentGeneSequence, int begin, int end)
StopCodonSequence(TranscriptSequence parentGeneSequence, int begin, int end)