org.biojava.nbio.core.sequence.compound

Class AmbiguityDNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

public class AmbiguityDNACompoundSet
extends DNACompoundSet

Author:

Andy Yates

Constructor Summary

Constructors

Constructor and Description
AmbiguityDNACompoundSet()

Method Summary

Modifier and Type	Method and Description
static AmbiguityDNACompoundSet	getDNACompoundSet()

Methods inherited from class org.biojava.nbio.core.sequence.compound.DNACompoundSet

newNucleotideCompound

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AmbiguityDNACompoundSet

public AmbiguityDNACompoundSet()

Method Detail

getDNACompoundSet

public static AmbiguityDNACompoundSet getDNACompoundSet()