Uses of Class
org.biojava.nbio.core.sequence.transcription.Frame

Packages that use Frame

Package	Description
org.biojava.nbio.core.sequence
org.biojava.nbio.core.sequence.transcription

Uses of Frame in org.biojava.nbio.core.sequence

Methods in org.biojava.nbio.core.sequence with parameters of type Frame

Modifier and Type	Method and Description
RNASequence	DNASequence.getRNASequence(Frame frame) Allows the user to pass in the Frame shift.
RNASequence	DNASequence.getRNASequence(TranscriptionEngine engine, Frame frame)

Uses of Frame in org.biojava.nbio.core.sequence.transcription

Methods in org.biojava.nbio.core.sequence.transcription that return Frame

Modifier and Type	Method and Description
static Frame[]	Frame.getAllFrames() Delegates to values()
static Frame	Frame.getDefaultFrame()
static Frame[]	Frame.getForwardFrames() Returns all frames in the forward orientation
static Frame[]	Frame.getReverseFrames() Returns all frames which are in the reverse orientation
static Frame	Frame.valueOf(String name) Returns the enum constant of this type with the specified name.
static Frame[]	Frame.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.core.sequence.transcription that return types with arguments of type Frame

Modifier and Type	Method and Description
Map<Frame,Sequence<AminoAcidCompound>>	TranscriptionEngine.multipleFrameTranslation(Sequence<NucleotideCompound> dna, Frame... frames) A way of translating DNA in a number of frames

Methods in org.biojava.nbio.core.sequence.transcription with parameters of type Frame

Modifier and Type	Method and Description
Sequence<NucleotideCompound>	DNAToRNATranslator.createSequence(Sequence<NucleotideCompound> originalSequence, Frame frame)
Map<Frame,Sequence<AminoAcidCompound>>	TranscriptionEngine.multipleFrameTranslation(Sequence<NucleotideCompound> dna, Frame... frames) A way of translating DNA in a number of frames