Uses of Interface
org.biojava.nbio.core.sequence.transcription.Table

Packages that use Table

Package	Description
org.biojava.nbio.core.sequence.io
org.biojava.nbio.core.sequence.transcription

Uses of Table in org.biojava.nbio.core.sequence.io

Classes in org.biojava.nbio.core.sequence.io that implement Table

Modifier and Type	Class and Description
static class	IUPACParser.IUPACTable Holds the concept of a codon table from the IUPAC format

Uses of Table in org.biojava.nbio.core.sequence.transcription

Methods in org.biojava.nbio.core.sequence.transcription that return Table

Modifier and Type	Method and Description
Table	TranscriptionEngine.getTable()

Methods in org.biojava.nbio.core.sequence.transcription with parameters of type Table

Modifier and Type	Method and Description
TranscriptionEngine.Builder	TranscriptionEngine.Builder.table(Table table)

Constructors in org.biojava.nbio.core.sequence.transcription with parameters of type Table

Constructor and Description
RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound> creator, CompoundSet<NucleotideCompound> nucleotides, CompoundSet<Table.Codon> codons, CompoundSet<AminoAcidCompound> aminoAcids, Table table, boolean trimStops, boolean initMetOnly, boolean translateNCodons) Deprecated. Retained for backwards compatability, setting RNAToAminoAcidTranslator.stopAtStopCodons to false
RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound> creator, CompoundSet<NucleotideCompound> nucleotides, CompoundSet<Table.Codon> codons, CompoundSet<AminoAcidCompound> aminoAcids, Table table, boolean trimStops, boolean initMetOnly, boolean translateNCodons, boolean stopAtStopCodons) Deprecated.
RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound> creator, CompoundSet<NucleotideCompound> nucleotides, CompoundSet<Table.Codon> codons, CompoundSet<AminoAcidCompound> aminoAcids, Table table, boolean trimStops, boolean initMetOnly, boolean translateNCodons, boolean stopAtStopCodons, boolean waitForStartCodon)