Uses of Class
org.biojava.nbio.core.sequence.transcription.TranscriptionEngine

Packages that use TranscriptionEngine

Package	Description
org.biojava.nbio.core.sequence
org.biojava.nbio.core.sequence.transcription

Uses of TranscriptionEngine in org.biojava.nbio.core.sequence

Methods in org.biojava.nbio.core.sequence with parameters of type TranscriptionEngine

Modifier and Type	Method and Description
ProteinSequence	TranscriptSequence.getProteinSequence(TranscriptionEngine engine) Get the protein sequence with user defined TranscriptEngine
ProteinSequence	RNASequence.getProteinSequence(TranscriptionEngine engine) Get the ProteinSequene from the RNA sequence with user defined transcription engine
RNASequence	DNASequence.getRNASequence(TranscriptionEngine engine) Allow a user to pass in a rules engine to do the DNA to RNA translation
RNASequence	DNASequence.getRNASequence(TranscriptionEngine engine, Frame frame)

Uses of TranscriptionEngine in org.biojava.nbio.core.sequence.transcription

Methods in org.biojava.nbio.core.sequence.transcription that return TranscriptionEngine

Modifier and Type	Method and Description
TranscriptionEngine	TranscriptionEngine.Builder.build() The method to finish any calls to the builder with which returns a transcription engine.
static TranscriptionEngine	TranscriptionEngine.getDefault() Default instance to use when Transcribing from DNA -> RNA -> Protein.